P-MITE: a Plant MITE database

Browse P-MITE

You can use the following links to get general features of MITEs for each species, family, which begins with the chosen letter.


Species A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Families A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Specie Name Family Category Number of sequences MITE family statistics Genome Link
Representatives ALL
Phoenix dactylifera Arecaceae Higher plant 78 39990 click here http://qatar-weill.cornell.edu/research/datepalmGenome/edition3/PdactyKAsm30_r20101206.fasta.gz
Arabidopsis lyrata Brassicaceae Higher plant 187 18039 click here ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Alyrata/assembly/
Arabidopsis thaliana Brassicaceae Higher plant 60 3245 click here ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/
Brassica rapa Brassicaceae Higher plant 304 45821 click here ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Brapa/assembly/Brapa_197.fa.gz
Thellungiella parvula Brassicaceae Higher plant 10 1161 click here http://thellungiella.org/blast/db/TpV8-4.fa
Thellungiella salsuginea Brassicaceae Higher plant 67 5133 click here http://www.diark.org/diark/check_licence?filename=genomes_genbank%2FEutrema_salsugineum_v1_contigs.zip
Carica papaya Caricaceae Higher plant 2 538 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Cpapaya/assembly/Cpapaya_113.fa.gz
Chlamydomonas reinhardtii Chlamydomonadaceae Lower plant 26 3508 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/early_release/Creinhardtii_v5.3/assembly/Creinhardtii_v5.3_223.fa.gz
Chlorella variabilis Chlorellaceae Lower plant 2 83 click here ftp://ftp.jgi-psf.org/pub/JGI_data/Chlorella_NC64A/assembly/v1.0/Chlorella_NC64A.fasta.gz
Citrullus lanatus Cucurbitaceae Higher plant 105 94314 click here ftp://www.icugi.org/pub/genome/watermelon/v1/
Cucumis melo Cucurbitaceae Higher plant 13 12991 click here https://melonomics.net/files/Genome/melon_genome_pseudomolecules_V3.5.fasta
Cucumis sativus Cucurbitaceae Higher plant 45 12855 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Csativus/assembly/Csativus_122.fa.gz
Cyanidioschyzon merolae Cyanidiaceae Lower plant 0 0 click here http://merolae.biol.s.u-tokyo.ac.jp/download/complete_chromosomes.txt
Manihot esculenta Euphorbiaceae Higher plant 52 30934 click here ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v7.0/Mesculenta/assembly/Mesculenta_147.fa.gz
Ricinus communis Euphorbiaceae Higher plant 46 13205 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Rcommunis/assembly/Rcommunis_119.fa.gz
Jatropha curcas Euphorbiaceae Higher plant 38 18975 click here ftp://ftp.kazusa.or.jp/pub/jatropha/JAT_r4.5.genome.gz
Glycine max Fabaceae Higher plant 250 169379 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v7.0/Gmax/assembly/Gmax_109.fa.gz
Lotus japonicus Fabaceae Higher plant 429 71811 click here ftp://ftp.kazusa.or.jp/pub/lotus/lotus_r2.5/Lj2.5_genome_contigs.fna.gz
Medicago truncatula Fabaceae Higher plant 889 132834 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/Mtruncatula/assembly/Mtruncatula_135.fa.gz
Cajanus cajan Fabaceae Higher plant 160 135581 click here http://www.icrisat.org/gt-bt/iipg/genomedata.zip
Cannabis sativa Fabaceae Higher plant 96 110123 click here http://genome.ccbr.utoronto.ca/downloads/canSat3_genome.fa.gz
physcomitrella Patens Funariaceae Lower plant 16 3718 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/Ppatens/assembly/Ppatens_152.fa.gz
Theobroma cacao Malvaceae Higher plant 17 10364 click here http://cocoagendb.cirad.fr/gbrowse/download/Theobroma_cacao_v1.0.pseudomolecule.fna.tar.gz
Linum usitatissimum Malvaceae Higher plant 37 14409 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Lusitatissimum/assembly/Lusitatissimum_200.fa.gz
Musa acuminata Musaceae Higher plant 92 15835 click here http://banana-genome.cirad.fr/downloading.php?file=musa_pseudochromosome.fna.gz
Coccomyxa subellipsoidea Palmellaceae Lower plant 5 187 click here http://genome.jgi.doe.gov/Coc_C169_1/download/Coccomyxa_C169_v2_genomic_scaffolds.fasta.gz
Zea mays Poaceae Higher plant 496 192529 click here http://ftp.maizesequence.org/current/assembly/
Brachypodium distachyon Poaceae Higher plant 850 83272 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v7.0/Bdistachyon/assembly/Bdistachyon_114.fa.gz
Oryza sativa Poaceae Higher plant 497 179415 click here ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_6.1
Setaria italica Poaceae Higher plant 465 69264 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/Sitalica/assembly/Sitalica_164.fa.gz
Sorghum bicolor Poaceae Higher plant 1161 112307 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Sbicolor/assembly/Sbicolor_79.fa.gz
Malus domestica Rosaceae Higher plant 830 237302 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Mdomestica/assembly/Mdomestica_196.fa.gz
Fragaria vesca Rosaceae Higher plant 328 34880 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Fvesca/assembly/Fvesca_226.fa.gz
Prunus persica Rosaceae Higher plant 156 39110 click here ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v7.0/Ppersica/assembly/Ppersica_139.fa.gz
citrus sinensis Rutaceae Higher plant 383 46032 click here http://citrus.hzau.edu.cn/orange/download/csi.chromosome.fa.tar.gz
Populus trichocarpa Salicaceae Higher plant 34 35081 click here ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v7.0/Ptrichocarpa/assembly/Ptrichocarpa_156.fa.gz
Selaginella moellendorffii Selaginellaceae Higher plant 2 73 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Smoellendorffii/assembly/Smoellendorffii_91.fa.gz
Solanum lycopersicum Solanaceae Higher plant 462 107087 click here http://solgenomics.net/organism/Solanum_lycopersicum/genome
Solanum tuberosum Solanaceae Higher plant 581 170392 click here http://potatogenomics.plantbiology.msu.edu/index.html
Vitis vinifera Vitaceae Higher plant 88 61065 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Vvinifera/assembly/Vvinifera_145.fa.gz
Volvox carteri Volvocaceae Lower plant 23 2104 click here ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/Vcarteri/assembly/Vcarteri_199.fa.gz